NFQ is the new and improved way to process iptables packets:
./snort --daq nfq \
[--daq-var device=<dev>] \
[--daq-var proto=<proto>] \
[--daq-var queue=<qid>] \
[--daq-var queue_len=<qlen>]
<dev> ::= ip | eth0, etc; default is IP injection
<proto> ::= ip4 | ip6 | ip*; default is ip4
<qid> ::= 0..65535; default is 0
<qlen> ::= 0..65535; default is 0
Notes on iptables can be found in the DAQ distro README.